Each salary is associated with a real job position. The national average salary for a Business Systems Analyst is $68,346 in United States. Filter by location to see Business Systems Analyst salaries in your area. Business Systems Analyst Ii salaries are collected from government agencies and companies. Salary estimates are based on 46,475 salaries submitted anonymously to Glassdoor by Systems Analyst II employees. Salary estimates are based on 65,205 salaries submitted anonymously to Glassdoor by Business Systems Analyst … Each salary is associated with a real job position. Learn about salaries, benefits, salary satisfaction and where you could earn the most. The national average salary for a Systems Analyst II is $69,715 in United States. Analyst Ii, Business Systems salaries are collected from government agencies and companies. Visit PayScale to research business systems analyst salaries by city, experience, skill, employer and more. Business Systems Analyst Ii average salary is $82,074, median salary is $79,335 with a salary range from $49,338 to $148,259. The average salary for a Business Systems Analyst is $69,551. Analyst Ii, Business Systems average salary is $75,484, median salary is $71,200 with a salary range from $58,000 to $101,000. The average salary for a Business Systems Analyst is $89,615 per year in United States. Filter by location to see Systems Analyst II salaries in your area.